ORK07646

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07646

Order Kazusa clone(s) from :

Accession No	AK226061
Product ID	ORK07646
Clone name	hh00225
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	SLC9A6
cDNA sequence	DNA sequence (6036 bp) Predicted protein sequence (668 aa)
Description	Homo sapiens mRNA for solute carrier family 9 (sodium/hydrogen exchanger), isoform 6 variant, clone: hh00225.

Features of the cloned cDNA sequence

Description

Length: 6036 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Features of the protein sequence

Description

Length: 668 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAH35029	100.0	Solute carrier ...	Homo sapiens
AAH49169	100.0	Solute carrier ...	Homo sapiens
EAW88481	99.7	solute carrier ...	Homo sapiens
BAF82464	99.5	unnamed protein...	Homo sapiens
XP_001101721	99.5	similar to solu...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002090	11	30	PR01088	Na+/H+ exchanger
	IPR002090	31	55	PR01088	Na+/H+ exchanger
	IPR002090	56	74	PR01088	Na+/H+ exchanger
	IPR002090	75	101	PR01088	Na+/H+ exchanger
	IPR002090	103	116	PR01088	Na+/H+ exchanger
	IPR004709	149	160	PR01084	Sodium/hydrogen exchanger subfamily
	IPR004709	163	177	PR01084	Sodium/hydrogen exchanger subfamily
	IPR004709	178	186	PR01084	Sodium/hydrogen exchanger subfamily
	IPR004709	223	233	PR01084	Sodium/hydrogen exchanger subfamily
	IPR002090	496	522	PR01088	Na+/H+ exchanger
	IPR002090	523	541	PR01088	Na+/H+ exchanger
	IPR002090	547	575	PR01088	Na+/H+ exchanger
	IPR002090	576	603	PR01088	Na+/H+ exchanger
	IPR002090	608	629	PR01088	Na+/H+ exchanger
HMMPfam	IPR006153	45	502	PF00999	Sodium/hydrogen exchanger
HMMTigr	IPR004709	31	654	TIGR00840	Sodium/hydrogen exchanger subfamily

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	40	NLLIFILLLTLTILTIWLFK	59	PRIMARY	20
	2	67	HETGLAMIYGLLVGLVLRYGIHV	89	PRIMARY	23
	3	144	TFDPEVFFNILLPPIIFYAGYSL	166	SECONDARY	23
	4	178	ILAYAFLGTAISCFVIGSIMYGC	200	PRIMARY	23
	5	218	DCLLFGAIVSATDPVTVLAIFHE	240	SECONDARY	23
	6	249	ALLFGESVLNDAVAIVLSSSIVA	271	SECONDARY	23
	7	290	SIGIFLGIFSGSFAMGAATGVVT	312	SECONDARY	23
	8	333	FLMSWSTFLLAEAWGFTGVVAVL	355	PRIMARY	23
	9	414	VGAFVAIFLGRAANIYPLSLLLN	436	SECONDARY	23
	10	482	LLIVFFTVWVFGGGTTAMLSCLH	504	PRIMARY	23