Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK07674
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Accession No AB208999
Product ID ORK07674
Clone name hk10125
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol GRIN1
cDNA sequence DNA sequence (4465 bp)
Predicted protein sequence (663 aa)
Description Homo sapiens mRNA for NMDA receptor 1 isoform NR1-2 precursor variant protein.
Features of the cloned cDNA sequence

Length: 4465 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : YES
Integrity of 3' end
Length of 3'UTR 1377 bp
Genome contig ID gi89161216f_139053490
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GCTCCTGTGGCCCACTCTGCCCCTGTCTCCCTGTG
Flanking genome sequence
(126207 - 126256)
----+----*----+----*----+----*----+----*----+----*
GCGGCCGCTCTGCCCAGCCCGCCCATGCTGCTCTCTCTCACTCTCTGGAC

Features of the protein sequence

Length: 663 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92236 0 100.0 NMDA receptor 1...
Homo sapiens
CAM17671 0 99.8 glutamate recep...
Homo sapiens
BAD92155 0 99.8 NMDA receptor 1...
Homo sapiens
EAW88358 0 95.8 glutamate recep...
Homo sapiens
EAW88352 0 95.8 glutamate recep...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom NULL 379 448 PD245531 NULL
FPrintScan IPR001508 226 254 PR00177 NMDA receptor
IPR001508 316 341 PR00177 NMDA receptor
IPR001508 354 378 PR00177 NMDA receptor
IPR001508 385 412 PR00177 NMDA receptor
IPR001508 567 591 PR00177 NMDA receptor
HMMPfam IPR001828 32 112 PF01094 Extracellular ligand-binding receptor
IPR001320 313 588 PF00060 Ionotropic glutamate receptor
HMMSmart IPR001320 187 549 SM00079 Ionotropic glutamate receptor

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 314 STLWLLVGLSVHVVAVMLYLLDR 336 PRIMARY 23
2 355 LTLSSAMWFSWGVLLNSGIGEGA 377 SECONDARY 23
3 387 GMVWAGFAMIIVASYTANLAAFL 409 PRIMARY 23
4 569 GVFMLVAGGIVAGIFLIFIEIA 590 PRIMARY 22
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