Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK07773
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Accession No
Product ID ORK07773
Clone name fk02085
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol MSH2
cDNA sequence DNA sequence (3101 bp)
Predicted protein sequence (938 aa)
Flexi ORF Clone FXC07773
Description mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)
Features of the cloned cDNA sequence

Length: 3101 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 272 bp
Genome contig ID gi89161199f_47383811
PolyA signal sequence
Flanking genome sequence
(180055 - 180104)

Features of the protein sequence

Length: 938 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
P43246 0 100.0 DNA mismatch re...
Homo sapiens
2O8E 0 99.8 5'-D(*GP*AP*AP*...
Homo sapiens
Q5XXB5 0 99.2 DNA mismatch re...
Chlorocebus aet...
XP_538482 0 96.1 similar to DNA ...
Canis lupus fam...
Q3MHE4 0 95.3 DNA mismatch re...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR000432 716 805 PD001263 DNA mismatch repair protein MutS
HMMPfam IPR007695 21 136 PF01624 DNA mismatch repair protein MutS
IPR007860 147 294 PF05188 MutS II
IPR007696 301 618 PF05192 MutS III
IPR007861 477 573 PF05190 MutS IV
IPR000432 623 858 PF00488 DNA mismatch repair protein MutS
HMMSmart IPR007696 325 649 SM00533 MutS III
IPR000432 666 853 SM00534 DNA mismatch repair protein MutS
ScanRegExp IPR000432 747 763 PS00486 DNA mismatch repair protein MutS
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