ORK07785

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07785

Order Kazusa clone(s) from :

Accession No
Product ID	ORK07785
Clone name	hh04063
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	ABCD2
cDNA sequence	DNA sequence (5745 bp) Predicted protein sequence (753 aa)
HaloTag ORF Clone	FHC07785
Flexi ORF Clone	FXC07785
Description	ATP-binding cassette, sub-family D (ALD), member 2

Features of the cloned cDNA sequence

Description

Length: 5745 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	3338 bp
Genome contig ID	gi89161190r_38130658
PolyA signal sequence (TATAAA,-23)	+--------+--------+----*----+---- TTCAGGTGGATGTATAAAATATTTTTTTAAAAACC
Flanking genome sequence (99986 - 99937)	----+--------+--------+--------+--------+----* AATTTCTTCTTCATTGTTGATGCTTTTCCTGACTACCAAGTTCAGGGCTG

Features of the protein sequence

Description

Length: 753 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9UBJ2	100.0	ATP-binding cas...	Homo sapiens
XP_001168647	99.7	ATP-binding cas...	Pan troglodytes
XP_534838	95.9	similar to ATP-...	Canis lupus fam...
Q61285	93.6	ATP-binding cas...	Mus musculus
BAC34641	93.6	unnamed protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR003439	622	663	PD000006	ABC transporter related
HMMPfam	IPR010509	91	378	PF06472	ABC transporter
HMMPfam	IPR003439	517	693	PF00005	ABC transporter related
HMMSmart	IPR003593	516	702	SM00382	AAA+ ATPase
ProfileScan	IPR011527	125	361	PS50929	ABC transporter
ProfileScan	IPR003439	491	717	PS50893	ABC transporter related
ScanRegExp	IPR003439	622	636	PS00211	ABC transporter related

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	36	AACLVAAAYALKTLYPIIG	54	SECONDARY	19
	2	120	LCLHSVALISRTFLSIYVAGLDG	142	SECONDARY	23
	3	154	RTFIIKLIKWLMIAIPATFVNSA	176	PRIMARY	23
	4	263	GASPIGPTLLAGLVVYATAKVLK	285	PRIMARY	23
	5	363	YVWSSSGLIMVAIPIITATGFA	384	PRIMARY	22