Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK07785
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Accession No
Product ID ORK07785
Clone name hh04063
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol ABCD2
cDNA sequence DNA sequence (5745 bp)
Predicted protein sequence (753 aa)
Flexi ORF Clone FXC07785
Description ATP-binding cassette, sub-family D (ALD), member 2
Features of the cloned cDNA sequence

Length: 5745 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 3338 bp
Genome contig ID gi89161190r_38130658
PolyA signal sequence
(TATAAA,-23)
+----*----+----*----+----*----+----
TTCAGGTGGATGTATAAAATATTTTTTTAAAAACC
Flanking genome sequence
(99986 - 99937)
----+----*----+----*----+----*----+----*----+----*
AATTTCTTCTTCATTGTTGATGCTTTTCCTGACTACCAAGTTCAGGGCTG

Features of the protein sequence

Length: 753 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9UBJ2 0 100.0 ATP-binding cas...
Homo sapiens
XP_001168647 0 99.7 ATP-binding cas...
Pan troglodytes
XP_534838 0 95.9 similar to ATP-...
Canis lupus fam...
Q61285 0 93.6 ATP-binding cas...
Mus musculus
BAC34641 0 93.6 unnamed protein...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR003439 622 663 PD000006 ABC transporter related
HMMPfam IPR010509 91 378 PF06472 ABC transporter
IPR003439 517 693 PF00005 ABC transporter related
HMMSmart IPR003593 516 702 SM00382 AAA+ ATPase
ProfileScan IPR011527 125 361 PS50929 ABC transporter
IPR003439 491 717 PS50893 ABC transporter related
ScanRegExp IPR003439 622 636 PS00211 ABC transporter related

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 36 AACLVAAAYALKTLYPIIG 54 SECONDARY 19
2 120 LCLHSVALISRTFLSIYVAGLDG 142 SECONDARY 23
3 154 RTFIIKLIKWLMIAIPATFVNSA 176 PRIMARY 23
4 263 GASPIGPTLLAGLVVYATAKVLK 285 PRIMARY 23
5 363 YVWSSSGLIMVAIPIITATGFA 384 PRIMARY 22
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