ORK08008

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK08008

Order Kazusa clone(s) from :

Accession No
Product ID	ORK08008
Clone name	bm04741
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	EIF3C
cDNA sequence	DNA sequence (2894 bp) Predicted protein sequence (919 aa)
HaloTag ORF Clone	FHC08008
Flexi ORF Clone	FXC08008
Description	eukaryotic translation initiation factor 3, subunit C

Features of the cloned cDNA sequence

Description

Length: 2894 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	83 bp
Genome contig ID	gi51511732f_28530302
PolyA signal sequence (ACTAAA,-21)	+--------+--------+----*----+---- ACCACACCTCAGTCACTAAAGGTCTGTTTAAAGTT
Flanking genome sequence (124118 - 124167)	----+--------+--------+--------+--------+----* GTTCTGGTTGATTGCTTGTTGCCACAAAGGTGTGTTGAGCCCATTCATTT

Features of the protein sequence

Description

Length: 919 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q99613	100.0	Eukaryotic tran...	Homo sapiens
AAX07826	99.8	cell migration-...	Homo sapiens
Q5RAT8	99.8	Eukaryotic tran...	Pongo abelii
AAC27674	99.7	eIF-3 p110 subu...	Homo sapiens
NP_001093131	99.8	eukaryotic tran...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR008905	35	711	PF05470	Eukaryotic translation initiation factor 3 subunit 8
HMMPfam	IPR000717	718	852	PF01399	Proteasome component region PCI
HMMSmart	IPR000717	784	872	SM00088	Proteasome component region PCI

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	607	ADPPVQILYNRTMVQLGICAFRQ	629	SECONDARY	23
SOSUI2	2	684	NLELLECVYLVSAMLLEIPYMAA	706	PRIMARY	23