Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK10443
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK10443 |
| Clone name | fj00071s1 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | ZNF398 |
| cDNA sequence | DNA sequence (5199 bp) Predicted protein sequence (729 aa) |
|
HaloTag ORF Clone |
FHC10443
|
| Flexi ORF Clone | FXC10443 |
| Description | zinc finger protein 398 |
Length: 5199 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: NO Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 2987 bp |
|---|---|
| Genome contig ID | gi89161213f_148375485 |
| PolyA signal sequence (AATAAA,-28) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (135335 - 135384) |
----+----*----+----*----+----*----+----*----+----* |
Length: 729 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| BlastProDom | IPR007087 | 598 | 621 | PD000003 | Zinc finger |
| IPR007087 | 626 | 649 | PD000003 | Zinc finger | |
| HMMPfam | IPR001909 | 230 | 270 | PF01352 | KRAB box |
| IPR007087 | 485 | 507 | PF00096 | Zinc finger | |
| IPR007087 | 514 | 536 | PF00096 | Zinc finger | |
| IPR007087 | 542 | 564 | PF00096 | Zinc finger | |
| IPR007087 | 570 | 592 | PF00096 | Zinc finger | |
| IPR007087 | 598 | 620 | PF00096 | Zinc finger | |
| IPR007087 | 626 | 648 | PF00096 | Zinc finger | |
| IPR007087 | 654 | 677 | PF00096 | Zinc finger | |
| HMMSmart | IPR001909 | 230 | 290 | SM00349 | KRAB box |
| IPR015880 | 430 | 451 | SM00355 | Zinc finger | |
| IPR015880 | 485 | 507 | SM00355 | Zinc finger | |
| IPR015880 | 514 | 536 | SM00355 | Zinc finger | |
| IPR015880 | 542 | 564 | SM00355 | Zinc finger | |
| IPR015880 | 570 | 592 | SM00355 | Zinc finger | |
| IPR015880 | 598 | 620 | SM00355 | Zinc finger | |
| IPR015880 | 626 | 648 | SM00355 | Zinc finger | |
| IPR015880 | 654 | 677 | SM00355 | Zinc finger | |
| ProfileScan | IPR003655 | 227 | 291 | PS50806 | KRAB-related |
| IPR001909 | 230 | 301 | PS50805 | KRAB box | |
| IPR007087 | 457 | 484 | PS50157 | Zinc finger | |
| IPR007087 | 485 | 512 | PS50157 | Zinc finger | |
| IPR007087 | 514 | 541 | PS50157 | Zinc finger | |
| IPR007087 | 542 | 569 | PS50157 | Zinc finger | |
| IPR007087 | 570 | 597 | PS50157 | Zinc finger | |
| IPR007087 | 598 | 625 | PS50157 | Zinc finger | |
| IPR007087 | 626 | 653 | PS50157 | Zinc finger | |
| IPR007087 | 654 | 679 | PS50157 | Zinc finger | |
| ScanRegExp | IPR007087 | 487 | 507 | PS00028 | Zinc finger |
| IPR007087 | 516 | 536 | PS00028 | Zinc finger | |
| IPR007087 | 544 | 564 | PS00028 | Zinc finger | |
| IPR007087 | 572 | 592 | PS00028 | Zinc finger | |
| IPR007087 | 600 | 620 | PS00028 | Zinc finger | |
| IPR007087 | 628 | 648 | PS00028 | Zinc finger | |
| IPR007087 | 656 | 677 | PS00028 | Zinc finger |
