Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK10489
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK10489 |
| Clone name | eg00560 |
| Vector information |
The cDNA fragment was inserted at the XhoI-SacI site
of the ...
|
| Symbol | DYSF |
| cDNA sequence | DNA sequence (6770 bp) Predicted protein sequence (2165 aa) |
|
HaloTag ORF Clone |
FHC10489
|
| Flexi ORF Clone | FXC10489 |
| Description | dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) |
Length: 6770 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: YES Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 270 bp |
|---|---|
| Genome contig ID | gi89161199f_71447341 |
| PolyA signal sequence (TATAAA,-20) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (320061 - 320110) |
----+----*----+----*----+----*----+----*----+----* |
Length: 2165 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR000008 | 1680 | 1692 | PR00360 | C2 calcium-dependent membrane targeting |
| IPR000008 | 1706 | 1719 | PR00360 | C2 calcium-dependent membrane targeting | |
| IPR000008 | 1728 | 1736 | PR00360 | C2 calcium-dependent membrane targeting | |
| HMMPfam | IPR000008 | 48 | 132 | PF00168 | C2 calcium-dependent membrane targeting |
| IPR000008 | 300 | 380 | PF00168 | C2 calcium-dependent membrane targeting | |
| IPR012968 | 381 | 452 | PF08151 | FerI | |
| IPR000008 | 459 | 557 | PF00168 | C2 calcium-dependent membrane targeting | |
| IPR012560 | 758 | 823 | PF08165 | FerA | |
| IPR012561 | 850 | 925 | PF08150 | FerB | |
| IPR000008 | 1218 | 1308 | PF00168 | C2 calcium-dependent membrane targeting | |
| IPR000008 | 1402 | 1485 | PF00168 | C2 calcium-dependent membrane targeting | |
| IPR000008 | 1665 | 1748 | PF00168 | C2 calcium-dependent membrane targeting | |
| IPR000008 | 1989 | 2011 | PF00168 | C2 calcium-dependent membrane targeting | |
| HMMSmart | IPR000008 | 47 | 147 | SM00239 | C2 calcium-dependent membrane targeting |
| IPR000008 | 299 | 395 | SM00239 | C2 calcium-dependent membrane targeting | |
| IPR000008 | 458 | 572 | SM00239 | C2 calcium-dependent membrane targeting | |
| IPR006613 | 938 | 997 | SM00693 | Dysferlin | |
| IPR006613 | 1010 | 1066 | SM00693 | Dysferlin | |
| IPR006614 | 1075 | 1113 | SM00694 | Dysferlin | |
| IPR006614 | 1132 | 1165 | SM00694 | Dysferlin | |
| IPR000008 | 1217 | 1325 | SM00239 | C2 calcium-dependent membrane targeting | |
| IPR000008 | 1402 | 1501 | SM00239 | C2 calcium-dependent membrane targeting | |
| IPR000008 | 1664 | 1763 | SM00239 | C2 calcium-dependent membrane targeting | |
| IPR000008 | 1897 | 2026 | SM00239 | C2 calcium-dependent membrane targeting | |
| ProfileScan | IPR000008 | 52 | 132 | PS50004 | C2 calcium-dependent membrane targeting |
| IPR000008 | 299 | 380 | PS50004 | C2 calcium-dependent membrane targeting | |
| IPR000008 | 461 | 557 | PS50004 | C2 calcium-dependent membrane targeting | |
| IPR000008 | 1203 | 1308 | PS50004 | C2 calcium-dependent membrane targeting | |
| IPR000008 | 1650 | 1748 | PS50004 | C2 calcium-dependent membrane targeting |
Prediction of transmembrane (TM) segments| Method | No. | N terminal | transmembrane region | C terminal | type | length | SOSUI2 | 1 | 2130 | WAIILFIILFILLLFLAIFIYAF | 2152 | PRIMARY | 23 |
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