ORK11004

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK11004

Order Kazusa clone(s) from :

Accession No
Product ID	ORK11004
Clone name	ha03113
Vector information	The cDNA fragment was inserted at the EcoRV-NotI site of th ... The cDNA fragment was inserted at the EcoRV-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the EcoRV (blunt-end ligation) site without using any linker or adapter. The 3' end of the cDNA was inserted at the NotI site of the vector.
Symbol	SLC30A5
cDNA sequence	DNA sequence (3945 bp) Predicted protein sequence (794 aa)
HaloTag ORF Clone	FHC11004
Flexi ORF Clone	FXC11004
Description	solute carrier family 30 (zinc transporter), member 5

Features of the cloned cDNA sequence

Description

Length: 3945 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1453 bp
Genome contig ID	gi51511721f_68325645
PolyA signal sequence (ATTAAA,-27)	+--------+--------+----*----+---- CAATACATATTAAAATTTTTGAGTGGTGGGAAAAT
Flanking genome sequence (137010 - 137059)	----+--------+--------+--------+--------+----* AATTGCATATTGATGTTTTAATGCAATTTTTATACATTAAAAAATTAAGT

Features of the protein sequence

Description

Length: 794 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q8TAD4	100.0	Zinc transporte...	Homo sapiens
ACE87364	99.8	solute carrier ...	synthetic construct
AAQ88869	99.7	SLC30A5 [Homo s...	Homo sapiens
XP_001161060	99.6	zinc transporte...	Pan troglodytes
XP_001090696	99.3	similar to zinc...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002524	448	762	PF01545	Cation efflux protein
HMMTigr	IPR002524	444	760	TIGR01297	Cation efflux protein

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	56	ARLTKYIVLLCFTKFLKAVGLFE	78	PRIMARY	23
	2	86	VHIVQFIFILKLGTAFFMVLFQK	108	PRIMARY	23
	3	127	HAVAGCIISLLWFFGLTLCGPLR	149	PRIMARY	23
	4	181	GAAFFIIAVICLLLFDNDDLMAK	203	SECONDARY	23
	5	210	GHHDSALTHMLYTAIAFLGVA	230	SECONDARY	21
	6	234	GGVLLLVLALCCKVGFHTAS	253	PRIMARY	20
	7	268	ALSHLVSVLLLCPWVIVLSVTTE	290	PRIMARY	23
	8	298	SLIMPFATVIFFVMILDFYVDSI	320	PRIMARY	23
	9	330	CARYGSFPIFISALLFGNFWTHP	352	SECONDARY	23
	10	371	HVLSGGVVVSAIFFILSANILSS	393	SECONDARY	23
	11	450	YFLCLNLLFTFVELFYGVLTNSL	472	PRIMARY	23
	12	478	GFHMLFDCSALVMGLFAALMSR	499	SECONDARY	22
	13	515	ILSGFINGLFLIVIAFFVFMESV	537	PRIMARY	23
	14	549	HMLTPVSVGGLIVNLIGICAFS	570	SECONDARY	22
	15	620	GVFLHVLADTLGSIGVIVSTVLI	642	PRIMARY	23
	16	656	LFIAILIFLSVVPLIKDACQVLL	678	PRIMARY	23