ORK11806

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK11806

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Accession No
Product ID	ORK11806
Clone name	fg06273
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	RNF43
cDNA sequence	DNA sequence (6662 bp) Predicted protein sequence (798 aa)
Description	RING finger protein 43 Precursor

Features of the cloned cDNA sequence

Description

Length: 6662 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	4043 bp
Genome contig ID	gi51511734r_53678282
PolyA signal sequence (AATAAA,-27)	+--------+--------+----*----+---- CAAATGTCAATAAATATGAACCTCGAGAAAGTTCT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* GAAGGCCATGACACCTGCCTTGCCTCCCTCTTCCATTCTCTTAGGCACAG

Features of the protein sequence

Description

Length: 798 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q68DV7	99.8	RING finger pro...	Homo sapiens
CAH10510	99.7	hypothetical pr...	Homo sapiens
BAF83716	99.7	unnamed protein...	Homo sapiens
BAA91085	99.6	unnamed protein...	Homo sapiens
BAD51435	99.4	urcc [Homo sapi...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001841	287	327	PF00097	Zinc finger
HMMSmart	IPR001841	287	327	SM00184	Zinc finger
ProfileScan	IPR001841	287	327	PS50089	Zinc finger

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	26	ALWPWLLMATLQAGFGRTGLVLA	48	SECONDARY	23
	2	164	EQLQQPLGLTWPVVLIWGNDAEK	186	SECONDARY	23
	3	213	DVWILMTVVGTIFVIILASVLR	234	PRIMARY	22