Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK11825
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Accession No
Product ID ORK11825
Clone name ha06816
Vector information
The cDNA fragment was inserted at the NotI-SalI site of the ...
Symbol ATP2A2
cDNA sequence DNA sequence (4694 bp)
Predicted protein sequence (1084 aa)
Description Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (SERCA2)(EC 3.6.3.8)(Calcium pump 2)(Calcium-transporting ATPase sarcoplasmic reticulum type, slow twitch skeletal muscle isoform)(SR Ca(2+)-ATPase 2)(Endoplasmic reticulum class 1/2 Ca(2+) ATPase)
Features of the cloned cDNA sequence

Length: 4694 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 1438 bp
Genome contig ID gi89161190f_109103851
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CAACACATCAGTCATGCACAGGGTTGGTAGATGTG
Flanking genome sequence None

Features of the protein sequence

Length: 1084 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
P16615 0 100.0 Sarcoplasmic/en...
Homo sapiens
XP_001141715 0 99.5 ATPase, Ca++ tr...
Pan troglodytes
P11607 0 99.0 Sarcoplasmic/en...
Sus scrofa
CAJ42045 0 99.0 sarcoplasmic/en...
Equus caballus
P11507 0 98.9 Sarcoplasmic/en...
Rattus norvegicus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001757 218 232 PR00119 ATPase
IPR001757 391 405 PR00119 ATPase
IPR001757 636 647 PR00119 ATPase
IPR001757 658 668 PR00119 ATPase
IPR000695 714 730 PR00120 H+ transporting ATPase
IPR000695 742 758 PR00120 H+ transporting ATPase
IPR001757 742 761 PR00119 ATPase
IPR001757 765 777 PR00119 ATPase
IPR000695 773 798 PR00120 H+ transporting ATPase
HMMPfam IPR004014 41 119 PF00690 ATPase
IPR008250 135 383 PF00122 E1-E2 ATPase-associated region
IPR005834 387 765 PF00702 Haloacid dehalogenase-like hydrolase
IPR006068 860 1032 PF00689 ATPase
HMMTigr IPR005782 95 1030 TIGR01116 Calcium ATPase
IPR001757 135 235 TIGR01494 ATPase
IPR001757 245 410 TIGR01494 ATPase
IPR001757 633 683 TIGR01494 ATPase
IPR001757 717 822 TIGR01494 ATPase
ScanRegExp IPR001757 393 399 PS00154 ATPase

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 100 EDLLVRILLLAACISFVLAWFEE 122 PRIMARY 23
2 128 TAFVEPFVILLILVANAIVGVWQ 150 PRIMARY 23
3 300 EQLSKVISLICIAVWIINIGHFN 322 PRIMARY 23
4 341 AVALAVAAIPEGLPAVITTCLAL 363 PRIMARY 23
5 817 FLTAALGFPEALIPVQLLWVNLV 839 SECONDARY 23
6 873 WLFFRYLAIGCYVGAATVGAAAW 895 PRIMARY 23
7 937 PMTMALSVLVTIEMCNALNSLSE 959 SECONDARY 23
8 975 VGSICLSMSLHFLILYVEPLPLI 997 PRIMARY 23
9 1003 LNVTQWLMVLKISLPVILMDETL 1025 SECONDARY 23
10 1055 GISWPFVLLIMPLVIWVYSTDTN 1077 PRIMARY 23
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