Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK11843
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK11843 |
| Clone name | pj02206 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | GABBR1 |
| cDNA sequence | DNA sequence (4232 bp) Predicted protein sequence (974 aa) |
| Description | Gamma-aminobutyric acid type B receptor subunit 1 Precursor (GABA-B receptor 1)(GABA-B-R1)(Gb1) |
Length: 4232 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: YES Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 1305 bp |
|---|---|
| Genome contig ID | gi89161210r_29577994 |
| PolyA signal sequence (AATAAA,-19) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (100000 - 99951) |
----+----*----+----*----+----*----+----*----+----* |
Length: 974 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR002456 | 178 | 199 | PR01177 | Metabotropic gamma-aminobutyric acid receptor |
| IPR002455 | 198 | 214 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 259 | 287 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002456 | 264 | 281 | PR01177 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 294 | 313 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 356 | 379 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 386 | 409 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002456 | 396 | 411 | PR01177 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002456 | 479 | 497 | PR01177 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 483 | 495 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002456 | 545 | 568 | PR01177 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002456 | 603 | 628 | PR01177 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 604 | 627 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 643 | 664 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002456 | 645 | 666 | PR01177 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 676 | 695 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 695 | 712 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 727 | 752 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 764 | 784 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 813 | 836 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002456 | 817 | 839 | PR01177 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002456 | 844 | 867 | PR01177 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002455 | 847 | 869 | PR01176 | Metabotropic gamma-aminobutyric acid receptor | |
| IPR002456 | 899 | 917 | PR01177 | Metabotropic gamma-aminobutyric acid receptor | |
| HMMPfam | IPR000436 | 113 | 170 | PF00084 | Sushi/SCR/CCP |
| IPR001828 | 200 | 559 | PF01094 | Extracellular ligand-binding receptor | |
| IPR000337 | 608 | 880 | PF00003 | GPCR | |
| HMMSmart | IPR000436 | 43 | 109 | SM00032 | Sushi/SCR/CCP |
| IPR000436 | 113 | 170 | SM00032 | Sushi/SCR/CCP | |
| ProfileScan | IPR000436 | 111 | 172 | PS50923 | Sushi/SCR/CCP |
| IPR000337 | 611 | 889 | PS50259 | GPCR |
Prediction of transmembrane (TM) segments| Method | No. | N terminal | transmembrane region | C terminal | type | length | SOSUI2 | 1 | 9 | GPRAEMLLLLLLAPLFLRPPGA | 30 | SECONDARY | 22 | 2 | 600 | LSQKLFISVSVLSSLGIVLAVVC | 622 | PRIMARY | 23 | 3 | 642 | LNNLTAVGCSLALAAVFPLGLDG | 664 | SECONDARY | 23 | 4 | 727 | VGLLVGMDVLTLAIWQIVDPLHR | 749 | SECONDARY | 23 | 5 | 785 | IFYGYKGLLLLLGIFLAYETKSV | 807 | PRIMARY | 23 | 6 | 817 | AVGMAIYNVAVLCLITAPVTMIL | 839 | PRIMARY | 23 | 7 | 848 | AFASLAIVFSSYITLVVLFVPK | 869 | PRIMARY | 22 |
|---|
