ORK06363

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK06363

Order Kazusa clone(s) from :

Accession No	AK226089
Product ID	ORK06363
Clone name	bm04690
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	PIK3IP1
cDNA sequence	DNA sequence (2264 bp) Predicted protein sequence (286 aa)
Description	Phosphoinositide-3-kinase-interacting protein 1 precursor (Kringle domain-containing protein HGFL).

Features of the cloned cDNA sequence

Description

Length: 2264 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1402 bp
Genome contig ID	gi89161203r_29907670
PolyA signal sequence (TATAAA,-19)	+--------+--------+----*----+---- CTGGTTTCTACTTTTCTATAAAGGCATTTCTCTAT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATACATGTTTTATATACCTCATTCTGACACCTGCATATAGTGTGGGAAAT

Features of the protein sequence

Description

Length: 286 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAH11049	1.3e-111	100.0	Phosphoinositid...	Homo sapiens
Q96FE7	2.1e-111	99.6	Phosphoinositid...	Homo sapiens
XP_530409	6.2e-111	99.2	HGFL protein is...	Pan troglodytes
BAC11140	2.1e-110	99.2	unnamed protein...	Homo sapiens
Q5RCS3	1.6e-109	98.0	Phosphoinositid...	Pongo abelii

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR000001	52	107	PD000395	Kringle
HMMPfam	IPR000001	88	107	PF00051	Kringle
HMMSmart	IPR000001	46	126	SM00130	Kringle
ProfileScan	IPR000001	47	124	PS50070	Kringle
ScanRegExp	IPR000001	92	105	PS00021	Kringle

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	22	ARMLLAWVQAFLVSNMLLAEAYG	44	SECONDARY	23
SOSUI2	2	192	LGYVLGITMMVIIIAIGAGIILG	214	PRIMARY	23