ORK10389

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK10389

Order Kazusa clone(s) from :

Accession No
Product ID	ORK10389
Clone name	bm06513
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	MANSC1
cDNA sequence	DNA sequence (2460 bp) Predicted protein sequence (442 aa)
Description	MANSC domain-containing protein 1 Precursor (Loss of heterozygosity 12 chromosomal region 3 protein)

Features of the cloned cDNA sequence

Description

Length: 2460 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	750 bp
Genome contig ID	gi89161190r_12273474
PolyA signal sequence (AATAAA,-11)	+--------+--------+----*----+---- TAGTTCCTTCCAATTAAATATTTGAATAAATCTTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* TGTTACTCAGTAGTGTTCTCATAAGTAGCATGTCCAGCTGGATAACTTTC

Features of the protein sequence

Description

Length: 442 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAH32998	2e-147	100.0	MANSC domain co...	Homo sapiens
Q9H8J5	2.2e-147	99.7	MANSC domain-co...	Homo sapiens
CAH91117	7.5e-141	95.5	hypothetical pr...	Pongo abelii
Q95KG7	9e-136	92.5	MANSC domain-co...	Macaca fascicularis
BAA91526	4.6e-131	91.8	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR011106	35	128	PF07502	Seven cysteines
HMMSmart	IPR011106	35	128	SM00765	Seven cysteines
ProfileScan	IPR013980	44	128	PS50986	Seven cysteines

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	17	EGSLTYTLVIICFLTLRLSASQN	39	PRIMARY	23
SOSUI2	2	395	WLLIGSLLFGVLFLVIGLVLLGR	417	PRIMARY	23