Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK07198
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Accession No AB209899
Product ID ORK07198
Clone name eh00571
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
Symbol CDRT1
cDNA sequence DNA sequence (5513 bp)
Predicted protein sequence (967 aa)
Description Tripartite motif-containing protein 16 (Estrogen-responsive B box protein).
Features of the cloned cDNA sequence

Length: 5513 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : NO
Features of the protein sequence

Length: 967 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD93136 0 100.0 Hypothetical pr...
 Homo sapiens
XP_220552 0 70.6 similar to F-bo...
 Rattus norvegicus
NP_006373 6.1e-163 99.3 CMT1A duplicate...
 Homo sapiens
CAB66756 5.9e-162 97.3 hypothetical pr...
 Homo sapiens
NP_113644 6.9e-162 98.6 F-box/WD repeat...
 Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR000315 153 170 PR01406 Zinc finger
IPR000315 170 184 PR01406 Zinc finger
IPR001680 792 806 PR00320 WD40 repeat
IPR001680 832 846 PR00320 WD40 repeat
IPR001680 911 925 PR00320 WD40 repeat
HMMPfam IPR000315 140 179 PF00643 Zinc finger
IPR001810 600 647 PF00646 Cyclin-like F-box
IPR001680 767 805 PF00400 WD40 repeat
IPR001680 809 845 PF00400 WD40 repeat
IPR001680 849 884 PF00400 WD40 repeat
IPR001680 888 924 PF00400 WD40 repeat
HMMSmart IPR000315 86 136 SM00336 Zinc finger
IPR000315 140 179 SM00336 Zinc finger
IPR006574 386 439 SM00589 SPRY-associated
IPR001680 766 805 SM00320 WD40 repeat
IPR001680 808 845 SM00320 WD40 repeat
IPR001680 848 884 SM00320 WD40 repeat
IPR001680 887 924 SM00320 WD40 repeat
ProfileScan IPR000315 140 179 PS50119 Zinc finger
IPR001680 773 814 PS50082 WD40 repeat
IPR001680 773 933 PS50294 WD40 repeat
IPR001680 815 854 PS50082 WD40 repeat
IPR001680 894 925 PS50082 WD40 repeat
ScanRegExp IPR001680 832 846 PS00678 WD40 repeat
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