ORK05922

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK05922

Order Kazusa clone(s) from :

Accession No	AB209372
Product ID	ORK05922
Clone name	fh17412
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	TAB1
cDNA sequence	DNA sequence (5127 bp) Predicted protein sequence (648 aa)
Description	Mitogen-activated protein kinase kinase kinase 7-interacting protein 1 (TGF-beta-activated kinase 1-binding protein 1) (TAK1-binding protein 1).

Features of the cloned cDNA sequence

Description

Length: 5127 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	1659 bp
Genome contig ID	gi89161203f_37975957
PolyA signal sequence (AATAAA,-31)	+--------+--------+----*----+---- AAGTAATAAATGGTGGCATTACACATTGTGATATT
Flanking genome sequence (181876 - 181925)	----+--------+--------+--------+--------+----* AATAGCGCTGTTGCTCATGTTTCCTGTAACTCGCAGTGGCCCTGGGAAGT

Features of the protein sequence

Description

Length: 648 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92609	0	100.0	mitogen-activat...	Homo sapiens
XP_515141	0	99.6	mitogen-activat...	Pan troglodytes
XP_001500005	2e-207	93.5	similar to mito...	Equus caballus
Q15750	5.1e-183	99.1	Mitogen-activat...	Homo sapiens
XP_849785	5.4e-180	97.1	similar to Mito...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR008253	107	155	PF01284	Marvel
HMMPfam	IPR014045	213	478	PF00481	Protein phosphatase 2C
HMMSmart	IPR001932	170	507	SM00332	Protein phosphatase 2C-related
ProfileScan	IPR008253	37	167	PS51225	Marvel

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	37	HLAGFPLLACIFSWLPSLFPYPL	59	PRIMARY	23
	2	70	GDALLNVPLFLGFPIFSPLTLSP	92	SECONDARY	23
	3	106	PAFWAFLWFVGFCYLANQWQV	126	SECONDARY	21