ORK05381

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK05381

Order Kazusa clone(s) from :

Accession No	AK226125
Product ID	ORK05381
Clone name	fj01440
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	GUCY1A3
cDNA sequence	DNA sequence (4294 bp) Predicted protein sequence (681 aa)
Description	Guanylate cyclase soluble subunit alpha-3 (EC 4.6.1.2) (GCS-alpha-3) (Soluble guanylate cyclase large subunit) (GCS-alpha-1).

Features of the cloned cDNA sequence

Description

Length: 4294 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	2122 bp
Genome contig ID	gi89161207f_156707731
PolyA signal sequence (AATAAA,-28)	+--------+--------+----*----+---- ATATCTAAATAAAAAATTACCAAAAAAAAAAAAAC
Flanking genome sequence	None

Features of the protein sequence

Description

Length: 681 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q02108	99.8	Guanylate cycla...	Homo sapiens
AAH28384	99.5	GUCY1A3 protein...	Homo sapiens
BAG53331	99.7	unnamed protein...	Homo sapiens
Q4ZHS0	93.2	Guanylate cycla...	Canis lupus fam...
AAY26558	91.3	soluble guanyla...	Sus scrofa

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR011645	261	462	PF07701	Heme NO binding associated
HMMPfam	IPR001054	463	650	PF00211	Adenylyl cyclase class-3/4/guanylyl cyclase
HMMSmart	IPR001054	436	627	SM00044	Adenylyl cyclase class-3/4/guanylyl cyclase
ProfileScan	IPR001054	472	599	PS50125	Adenylyl cyclase class-3/4/guanylyl cyclase
ScanRegExp	IPR001054	576	599	PS00452	Adenylyl cyclase class-3/4/guanylyl cyclase

Order Kazusa clone(s) from :

Japan || Other countries
Send a message to office AT kazusa.or.jp