ORK06848

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK06848

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Accession No	AB209540
Product ID	ORK06848
Clone name	fk11443
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	SLC19A2
cDNA sequence	DNA sequence (3130 bp) Predicted protein sequence (125 aa)
Description	Thiamine transporter 1 (ThTr-1) (ThTr1) (Thiamine carrier 1) (TC1) (Solute carrier family 19 member 2).

Features of the cloned cDNA sequence

Description

Length: 3130 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1917 bp
Genome contig ID	gi89161185r_167599794
PolyA signal sequence (AATAAA,-17)	+--------+--------+----*----+---- ATAAAATTATTTTTATTAAATAAATATTTTACAGT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATATTTTCTCTTTTTAATCAAAATTGTTTTAAATTTATCTTCTATTTCAG

Features of the protein sequence

Description

Length: 125 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92777	1.1e-46	100.0	solute carrier ...	Homo sapiens
AAH18514	6.5e-31	92.0	SLC19A2 protein...	Homo sapiens
BAG64936	7.7e-31	92.0	unnamed protein...	Homo sapiens
CAI19781	8.7e-31	92.0	solute carrier ...	Homo sapiens
EAW90844	8.8e-31	92.0	solute carrier ...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002666	12	86	PF01770	Reduced folate carrier
ScanRegExp	IPR000276	35	51	PS00237	Rhodopsin-like GPCR superfamily

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	17	NIISTPEVILIYSLFYFFLSFQI	39	PRIMARY	23
	2	52	FGVNTFIALALQTLLTLIVVDAS	74	PRIMARY	23
	3	85	LIYASYFALIAVVFLASGAVSVM	107	PRIMARY	23