ORK04013

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK04013

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Accession No	AB209564
Product ID	ORK04013
Clone name	fk14403
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	ABCF1
cDNA sequence	DNA sequence (2867 bp) Predicted protein sequence (593 aa)
Description	ATP-binding cassette sub-family F member 1 (ATP-binding cassette 50) (TNF-alpha-stimulated ABC protein).

Features of the cloned cDNA sequence

Description

Length: 2867 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Features of the protein sequence

Description

Length: 593 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92801	1.4e-188	100.0	ATP-binding cas...	Homo sapiens
CAH10648	4e-187	99.8	hypothetical pr...	Homo sapiens
EAX03302	4.1e-187	99.8	ATP-binding cas...	Homo sapiens
AAH34488	4.7e-187	99.8	ATP-binding cas...	Homo sapiens
Q8NE71	4.7e-187	99.8	ATP-binding cas...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR003439	200	242	PD000006	ABC transporter related
BlastProDom	IPR003439	491	533	PD000006	ABC transporter related
HMMPfam	IPR003439	77	272	PF00005	ABC transporter related
HMMPfam	IPR003439	399	563	PF00005	ABC transporter related
HMMSmart	IPR003593	76	280	SM00382	AAA+ ATPase
HMMSmart	IPR003593	398	563	SM00382	AAA+ ATPase
ProfileScan	IPR003439	52	296	PS50893	ABC transporter related
ProfileScan	IPR003439	373	588	PS50893	ABC transporter related
ScanRegExp	IPR003439	200	214	PS00211	ABC transporter related
ScanRegExp	IPR003439	491	505	PS00211	ABC transporter related

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