ORK10438

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK10438

Order Kazusa clone(s) from :

Accession No
Product ID	ORK10438
Clone name	pj01758
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	ERMP1
cDNA sequence	DNA sequence (4343 bp) Predicted protein sequence (589 aa)
Description	Endoplasmic reticulum metallopeptidase 1 (EC 3.4.-.-)(Felix-ina)

Features of the cloned cDNA sequence

Description

Length: 4343 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	2571 bp
Genome contig ID	gi89161216r_5674573
PolyA signal sequence (AATAAA,-17)	+--------+--------+----*----+---- GCCTTACAATGTTACTGAAATAAACTGTTTAATAT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ACTGGTTGGTATCTTTTTAACTGAAAAACAGATCTGTGTTCTTCTGTATC

Features of the protein sequence

Description

Length: 589 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q7Z2K6	100.0	Endoplasmic ret...	Homo sapiens
XP_001493226	92.6	endoplasmic ret...	Equus caballus
XP_852123	91.1	similar to puta...	Canis lupus fam...
XP_001924252	90.6	endoplasmic ret...	Sus scrofa
Q3UVK0	87.7	Endoplasmic ret...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007484	1	54	PF04389	Peptidase M28

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	82	GNMVFFDVLGLFVIAY	97	PRIMARY	16
	2	103	SIINYMVVMGVVLYLG	118	PRIMARY	16
	3	140	GITLISWFTSLVTVLIIAVFISL	162	PRIMARY	23
	4	174	YVSVCLYGTATVAKIILIHTLA	195	PRIMARY	22
	5	206	QYLGEVFFDISLFVHCCFLVTLT	228	PRIMARY	23
	6	232	LCSAFISAVWVAFPLLTKLCVHK	254	PRIMARY	23
	7	267	AFYLLGMFIPYLYALYLIWAVFE	289	PRIMARY	23
	8	304	PDVVLASILAGCTMILSSYFINF	326	SECONDARY	23
	9	336	TMLTLTLVCAITFLLVCSGTFFP	358	PRIMARY	23