Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK02018
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK02018 |
| Clone name | sh02340 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | CASKIN2 |
| cDNA sequence | DNA sequence (4958 bp) Predicted protein sequence (1326 aa) |
|
HaloTag ORF Clone |
FHC02018
|
| Flexi ORF Clone | FXC02018 |
| Description | Caskin-2. |
Length: 4958 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: NO Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 818 bp |
|---|---|
| Genome contig ID | gi51511734r_70907938 |
| PolyA signal sequence (AATGAA,-22) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (100000 - 99951) |
----+----*----+----*----+----*----+----*----+----* |
Length: 1326 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR002110 | 239 | 251 | PR01415 | Ankyrin |
| IPR002110 | 357 | 369 | PR01415 | Ankyrin | |
| HMMPfam | IPR002110 | 172 | 204 | PF00023 | Ankyrin |
| IPR002110 | 205 | 237 | PF00023 | Ankyrin | |
| IPR002110 | 238 | 270 | PF00023 | Ankyrin | |
| IPR002110 | 271 | 293 | PF00023 | Ankyrin | |
| IPR002110 | 312 | 344 | PF00023 | Ankyrin | |
| IPR002110 | 347 | 376 | PF00023 | Ankyrin | |
| IPR011511 | 409 | 469 | PF07653 | Variant SH3 | |
| IPR001660 | 611 | 674 | PF00536 | Sterile alpha motif SAM | |
| IPR001660 | 680 | 744 | PF00536 | Sterile alpha motif SAM | |
| HMMSmart | IPR002110 | 172 | 201 | SM00248 | Ankyrin |
| IPR002110 | 205 | 234 | SM00248 | Ankyrin | |
| IPR002110 | 238 | 267 | SM00248 | Ankyrin | |
| IPR002110 | 271 | 300 | SM00248 | Ankyrin | |
| IPR002110 | 312 | 341 | SM00248 | Ankyrin | |
| IPR002110 | 344 | 373 | SM00248 | Ankyrin | |
| IPR001452 | 408 | 470 | SM00326 | Src homology-3 | |
| IPR001660 | 610 | 676 | SM00454 | Sterile alpha motif SAM | |
| IPR001660 | 679 | 746 | SM00454 | Sterile alpha motif SAM | |
| ProfileScan | IPR002110 | 165 | 382 | PS50297 | Ankyrin |
| IPR002110 | 172 | 204 | PS50088 | Ankyrin | |
| IPR002110 | 205 | 237 | PS50088 | Ankyrin | |
| IPR002110 | 238 | 270 | PS50088 | Ankyrin | |
| IPR002110 | 312 | 344 | PS50088 | Ankyrin | |
| IPR002110 | 344 | 376 | PS50088 | Ankyrin | |
| IPR001452 | 405 | 471 | PS50002 | Src homology-3 | |
| IPR001660 | 613 | 676 | PS50105 | Sterile alpha motif SAM | |
| IPR001660 | 682 | 746 | PS50105 | Sterile alpha motif SAM |
