Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01013
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Accession No AB210030
Product ID ORK01013
Clone name hh05253
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol SEMA4D
cDNA sequence DNA sequence (5682 bp)
Predicted protein sequence (870 aa)
Flexi ORF Clone FXC01013
Description Semaphorin-4D precursor (Leukocyte activation antigen CD100) (BB18) (A8) (GR3).
Features of the cloned cDNA sequence

Length: 5682 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 2316 bp
Genome contig ID gi89161216r_91081357
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
TCCCAACCTGTGGTATATAGGATTGCTTCTCCCTT
Flanking genome sequence
(99764 - 99715)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAATTTCAAGAGACAGGGTCTCCCTCTGTCACCAAGGCT

Features of the protein sequence

Length: 870 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAE06112 0 100.0 SEMA4D variant ...
Homo sapiens
XP_001141771 0 99.4 semaphorin 4D [...
Pan troglodytes
BAG10251 0 100.0 semaphorin-4D p...
synthetic construct
Q92854 0 99.8 Semaphorin-4D; ...
Homo sapiens
AAH54500 0 99.7 Sema domain, im...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001627 58 490 PF01403 Semaphorin/CD100 antigen
IPR002165 510 562 PF01437 Plexin
IPR013151 577 634 PF00047 Immunoglobulin
HMMSmart IPR001627 58 490 SM00630 Semaphorin/CD100 antigen
IPR003659 510 562 SM00423 Plexin/semaphorin/integrin
IPR003599 569 655 SM00409 Immunoglobulin subtype
IPR003598 575 639 SM00408 Immunoglobulin subtype 2
ProfileScan IPR001627 27 508 PS51004 Semaphorin/CD100 antigen
IPR007110 562 644 PS50835 Immunoglobulin-like

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 16 RGLLMALAVMFGTAMAFAPIPRI 38 PRIMARY 23
2 742 RLLMSLFLFFFVLFLCLFFYNCY 764 PRIMARY 23
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