Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01281
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Accession No
Product ID ORK01281
Clone name sh03843
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol TAP2
cDNA sequence DNA sequence (5448 bp)
Predicted protein sequence (704 aa)
Flexi ORF Clone FXC01281
Description transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
Features of the cloned cDNA sequence

Length: 5448 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : YES
Integrity of 3' end
Length of 3'UTR 3267 bp
Genome contig ID gi89161210r_32801176
PolyA signal sequence
(ATTAAA,-24)
+----*----+----*----+----*----+----
TTATTTTTTAAATTAAAAATATATGGCTATGTAGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATTCTATTTTATGGAAGTTCCATATTTCATTTATCCTGTTTCCTTCTACT

Features of the protein sequence

Length: 704 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92190 0 100.0 transporter 2, ...
Homo sapiens
CAA80522 0 100.0 TAP2B [Homo sap...
Homo sapiens
AAA59841 0 99.8 putative peptid...
Homo sapiens
BAB71769 0 99.8 ABC-transporter...
Homo sapiens
AAB36588 0 99.5 ABC-transporter...
Gorilla gorilla
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR003439 607 648 PD000006 ABC transporter related
FPrintScan IPR013306 38 52 PR01897 ABC transporter
IPR013305 47 69 PR01896 ABC transporter
IPR013306 53 67 PR01897 ABC transporter
IPR013306 70 84 PR01897 ABC transporter
IPR013306 102 116 PR01897 ABC transporter
IPR013306 117 132 PR01897 ABC transporter
IPR013306 179 193 PR01897 ABC transporter
IPR013306 304 322 PR01897 ABC transporter
IPR013306 357 371 PR01897 ABC transporter
IPR013305 517 531 PR01896 ABC transporter
IPR013306 573 588 PR01897 ABC transporter
IPR013305 646 664 PR01896 ABC transporter
HMMPfam IPR001140 153 424 PF00664 ABC transporter
IPR003439 497 679 PF00005 ABC transporter related
HMMSmart IPR003593 496 679 SM00382 AAA+ ATPase
HMMTigr IPR005293 2 698 TIGR00958 Antigen peptide transporter 2
ProfileScan IPR011527 154 436 PS50929 ABC transporter
IPR003439 469 703 PS50893 ABC transporter related
ScanRegExp IPR003439 608 622 PS00211 ABC transporter related

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 9 PWTSLLLVDAALLWLLQGPLGTL 31 SECONDARY 23
2 60 LGFVGTLLLPLCLATPLTVSLRA 82 PRIMARY 23
3 101 SWLLVGYGAAGLSWSLWAVLSPP 123 SECONDARY 23
4 143 LKLSRPDLPLLVAAFFFLVLAVL 165 PRIMARY 23
5 185 FDPHAFASAIFFMCLFSFGSSL 206 SECONDARY 22
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