Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01302
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Accession No
Product ID ORK01302
Clone name hk10145
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol TARDBP
cDNA sequence DNA sequence (4171 bp)
Predicted protein sequence (415 aa)
Flexi ORF Clone FXC01302
Description TAR DNA-binding protein 43 (TDP-43).
Features of the cloned cDNA sequence

Length: 4171 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 2840 bp
Genome contig ID gi89161185f_10895314
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
TGAACCAGATAAATAAAATTTTTTTTTGACACCAC
Flanking genome sequence
(112823 - 112872)
----+----*----+----*----+----*----+----*----+----*
AGTTTAGTGTCTGGAGTCTTACTGGAAAAACACGATTTCTTTTTATATGT

Features of the protein sequence

Length: 415 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q13148 4.4e-149 100.0 TAR DNA-binding...
Homo sapiens
ABO32290 4.4e-149 100.0 TDP43 [Homo sap...
Homo sapiens
Q5R5W2 9.4e-149 99.7 TAR DNA-binding...
Pongo abelii
CAL37794 1.1e-148 99.7 hypothetical pr...
synthetic construct
BAD96474 1.4e-148 99.7 TAR DNA binding...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000504 107 176 PF00076 RNA recognition motif
IPR000504 194 237 PF00076 RNA recognition motif
HMMSmart IPR000504 106 177 SM00360 RNA recognition motif
IPR000504 193 259 SM00360 RNA recognition motif
ProfileScan IPR000504 105 201 PS50102 RNA recognition motif
IPR000504 192 263 PS50102 RNA recognition motif
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