Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK01563
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK01563 |
| Clone name | ek00291 |
| Vector information |
The cDNA fragment was inserted at the XhoI-SacI site
of the ...
|
| Symbol | MMP2 |
| cDNA sequence | DNA sequence (2953 bp) Predicted protein sequence (708 aa) |
|
HaloTag ORF Clone |
FHC01563
|
| Flexi ORF Clone | FXC01563 |
| Description | 72 kDa type IV collagenase precursor (EC 3.4.24.24) (72 kDa gelatinase) (Matrix metalloproteinase-2) (MMP-2) (Gelatinase A) (TBE- 1). |
Length: 2953 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: NO Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 797 bp |
|---|---|
| Genome contig ID | gi51511732f_53970720 |
| PolyA signal sequence (AATAAA,-23) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (126934 - 126983) |
----+----*----+----*----+----*----+----*----+----* |
Length: 708 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| BlastProDom | IPR000562 | 274 | 323 | PD000995 | Type II fibronectin |
| IPR000562 | 371 | 440 | PD000995 | Type II fibronectin | |
| FPrintScan | IPR001818 | 145 | 158 | PR00138 | Peptidase M10A and M12B |
| IPR001818 | 192 | 207 | PR00138 | Peptidase M10A and M12B | |
| IPR001818 | 215 | 243 | PR00138 | Peptidase M10A and M12B | |
| IPR000562 | 394 | 403 | PR00013 | Type II fibronectin | |
| IPR000562 | 405 | 417 | PR00013 | Type II fibronectin | |
| IPR000562 | 422 | 437 | PR00013 | Type II fibronectin | |
| IPR001818 | 448 | 473 | PR00138 | Peptidase M10A and M12B | |
| IPR001818 | 481 | 494 | PR00138 | Peptidase M10A and M12B | |
| HMMPfam | IPR002477 | 118 | 149 | PF01471 | Peptidoglycan binding-like |
| IPR001818 | 166 | 494 | PF00413 | Peptidase M10A and M12B | |
| IPR000562 | 281 | 322 | PF00040 | Type II fibronectin | |
| IPR000562 | 339 | 380 | PF00040 | Type II fibronectin | |
| IPR000562 | 397 | 438 | PF00040 | Type II fibronectin | |
| IPR000585 | 523 | 566 | PF00045 | Hemopexin | |
| IPR000585 | 568 | 611 | PF00045 | Hemopexin | |
| IPR000585 | 616 | 663 | PF00045 | Hemopexin | |
| IPR000585 | 665 | 708 | PF00045 | Hemopexin | |
| HMMSmart | IPR006026 | 163 | 495 | SM00235 | Peptidase |
| IPR000562 | 274 | 322 | SM00059 | Type II fibronectin | |
| IPR000562 | 332 | 380 | SM00059 | Type II fibronectin | |
| IPR000562 | 390 | 438 | SM00059 | Type II fibronectin | |
| IPR000585 | 523 | 566 | SM00120 | Hemopexin | |
| IPR000585 | 568 | 611 | SM00120 | Hemopexin | |
| IPR000585 | 616 | 663 | SM00120 | Hemopexin | |
| IPR000585 | 665 | 708 | SM00120 | Hemopexin | |
| ProfileScan | IPR000562 | 276 | 324 | PS51092 | Type II fibronectin |
| IPR000562 | 334 | 382 | PS51092 | Type II fibronectin | |
| IPR000562 | 392 | 440 | PS51092 | Type II fibronectin | |
| ScanRegExp | IPR001818 | 148 | 155 | PS00546 | Peptidase M10A and M12B |
| IPR000562 | 281 | 322 | PS00023 | Type II fibronectin | |
| IPR000562 | 339 | 380 | PS00023 | Type II fibronectin | |
| IPR000562 | 397 | 438 | PS00023 | Type II fibronectin | |
| IPR006025 | 448 | 457 | PS00142 | Peptidase M | |
| IPR000585 | 654 | 669 | PS00024 | Hemopexin |
