Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01702
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Accession No
Product ID ORK01702
Clone name bm03010
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
Symbol RBM42
cDNA sequence DNA sequence (1658 bp)
Predicted protein sequence (493 aa)
Flexi ORF Clone FXC01702
Description RNA binding motif protein 42
Features of the cloned cDNA sequence

Length: 1658 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 130 bp
Genome contig ID gi42406306f_40711811
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
CCAAAACCAGTTTCAATAAATTTACGTTCATTTCC
Flanking genome sequence
(108617 - 108666)
----+----*----+----*----+----*----+----*----+----*
ACCCCTGGCTGGGCATGGAAGCACGCTGTGGGGAGCAGGGCTTGGCTTCC

Features of the protein sequence

Length: 493 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9BTD8 8.6e-139 100.0 RNA-binding pro...
Homo sapiens
XP_001096199 2e-138 99.7 similar to Temp...
Macaca mulatta
XP_524226 5.2e-136 98.5 similar to MGC1...
Pan troglodytes
XP_001096086 1.2e-135 98.3 similar to Temp...
Macaca mulatta
XP_001492287 4.5e-135 98.1 similar to RNA ...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000504 396 467 PF00076 RNA recognition motif
HMMSmart IPR000504 395 468 SM00360 RNA recognition motif
ProfileScan IPR000504 394 472 PS50102 RNA recognition motif
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