Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01724
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Accession No
Product ID ORK01724
Clone name fh04242
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol PCDHB12
cDNA sequence DNA sequence (4363 bp)
Predicted protein sequence (809 aa)
Description protocadherin beta 12
Features of the cloned cDNA sequence

Length: 4363 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : YES
Integrity of 3' end
Length of 3'UTR 723 bp
Genome contig ID gi51511721f_140461102
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
ATCTTTATTTAGAAATAAACTTTATCTATGATTTC
Flanking genome sequence
(110674 - 110723)
----+----*----+----*----+----*----+----*----+----*
ATTTTCTTATAAACCAGTAATCTTGCTTTTCTGGGTAAATTTTCAGCTAT

Features of the protein sequence

Length: 809 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9Y5F1 0 100.0 Protocadherin b...
Homo sapiens
Q5DRD7 0 97.7 Protocadherin b...
Pan troglodytes
XP_001087513 0 93.9 protocadherin b...
Macaca mulatta
XP_001145920 0 90.1 similar to Prot...
Pan troglodytes
Q5DRD8 0 89.4 Protocadherin b...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR002126 87 106 PR00205 Cadherin
IPR002126 256 285 PR00205 Cadherin
IPR002126 328 340 PR00205 Cadherin
IPR002126 340 359 PR00205 Cadherin
IPR002126 463 476 PR00205 Cadherin
IPR002126 523 549 PR00205 Cadherin
IPR002126 557 574 PR00205 Cadherin
HMMPfam IPR013164 43 126 PF08266 Cadherin
IPR002126 152 247 PF00028 Cadherin
IPR002126 261 352 PF00028 Cadherin
IPR002126 366 456 PF00028 Cadherin
IPR002126 470 566 PF00028 Cadherin
IPR002126 594 677 PF00028 Cadherin
HMMSmart IPR002126 68 145 SM00112 Cadherin
IPR002126 169 254 SM00112 Cadherin
IPR002126 278 359 SM00112 Cadherin
IPR002126 382 463 SM00112 Cadherin
IPR002126 487 573 SM00112 Cadherin
IPR002126 603 684 SM00112 Cadherin
ProfileScan IPR002126 89 147 PS50268 Cadherin
IPR002126 148 256 PS50268 Cadherin
IPR002126 257 361 PS50268 Cadherin
IPR002126 362 465 PS50268 Cadherin
IPR002126 466 575 PS50268 Cadherin
IPR002126 594 685 PS50268 Cadherin
ScanRegExp IPR002126 135 145 PS00232 Cadherin
IPR002126 244 254 PS00232 Cadherin
IPR002126 349 359 PS00232 Cadherin
IPR002126 453 463 PS00232 Cadherin
IPR002126 563 573 PS00232 Cadherin

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 23 LQIRQVLLFFVLLGMSQAGSETG 45 SECONDARY 23
2 703 YLVVALASVSSLFLFSVLLFVAV 725 PRIMARY 23
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