Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK04252
Order Kazusa clone(s) from : Japan || Other countries
Accession No AB209217
Product ID ORK04252
Clone name fj11209
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol DDX39B
cDNA sequence DNA sequence (4300 bp)
Predicted protein sequence (310 aa)
Description Spliceosome RNA helicase BAT1 (EC 3.6.1.-) (DEAD box protein UAP56) (56 kDa U2AF65-associated protein) (ATP-dependent RNA helicase p47) (HLA-B-associated transcript-1).
Features of the cloned cDNA sequence

Length: 4300 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : YES
Integrity of 3' end
Length of 3'UTR 3357 bp
Genome contig ID gi89161210r_31506027
PolyA signal sequence
Flanking genome sequence
(99975 - 99926)

Features of the protein sequence

Length: 310 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92454 1.2e-133 100.0 HLA-B associate...
Homo sapiens
EAX03412 3.4e-123 100.0 hCG2005638, iso...
Homo sapiens
BAE42496 1.7e-112 98.1 unnamed protein...
Mus musculus
CAI18282 4e-102 100.0 HLA-B associate...
Homo sapiens
CAI18284 5.3e-102 100.0 HLA-B associate...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR011545 89 258 PF00270 DNA/RNA helicase
HMMSmart IPR014001 84 279 SM00487 DEAD-like helicases
ProfileScan IPR014014 65 93 PS51195 RNA helicase
IPR014021 96 269 PS51192 Helicase
Order Kazusa clone(s) from : Japan || Other countries
Send a message to office AT kazusa.or.jp