Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK04606
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | AB209636 |
|---|---|
| Product ID | ORK04606 |
| Clone name | sh04217 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | COL6A3 |
| cDNA sequence | DNA sequence (5866 bp) Predicted protein sequence (1702 aa) |
| Description | Collagen alpha-3(VI) chain precursor. |
Length: 5866 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: YES Warning for coding interruption : YES Integrity of 3' end
| Length of 3'UTR | 756 bp |
|---|---|
| Genome contig ID | gi89161199r_237797400 |
| PolyA signal sequence (AATAAA,-21) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (100000 - 99951) |
----+----*----+----*----+----*----+----*----+----* |
Length: 1702 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| BlastProDom | IPR008161 | 603 | 628 | PD000007 | Collagen helix repeat |
| IPR008161 | 653 | 687 | PD000007 | Collagen helix repeat | |
| IPR008161 | 840 | 862 | PD000007 | Collagen helix repeat | |
| IPR008161 | 869 | 898 | PD000007 | Collagen helix repeat | |
| IPR002223 | 1637 | 1687 | PD000222 | Proteinase inhibitor I2 | |
| FPrintScan | IPR002035 | 163 | 180 | PR00453 | von Willebrand factor |
| IPR002035 | 202 | 216 | PR00453 | von Willebrand factor | |
| IPR002035 | 472 | 480 | PR00453 | von Willebrand factor | |
| IPR002223 | 1634 | 1648 | PR00759 | Proteinase inhibitor I2 | |
| IPR002223 | 1662 | 1672 | PR00759 | Proteinase inhibitor I2 | |
| IPR002223 | 1672 | 1687 | PR00759 | Proteinase inhibitor I2 | |
| HMMPfam | IPR002035 | 1 | 134 | PF00092 | von Willebrand factor |
| IPR002035 | 164 | 337 | PF00092 | von Willebrand factor | |
| IPR008160 | 563 | 622 | PF01391 | Collagen triple helix repeat | |
| IPR008160 | 629 | 688 | PF01391 | Collagen triple helix repeat | |
| IPR008160 | 720 | 779 | PF01391 | Collagen triple helix repeat | |
| IPR008160 | 780 | 825 | PF01391 | Collagen triple helix repeat | |
| IPR008160 | 839 | 898 | PF01391 | Collagen triple helix repeat | |
| IPR002035 | 927 | 1106 | PF00092 | von Willebrand factor | |
| IPR002035 | 1144 | 1335 | PF00092 | von Willebrand factor | |
| IPR002223 | 1636 | 1688 | PF00014 | Proteinase inhibitor I2 | |
| HMMSmart | IPR002035 | 1 | 132 | SM00327 | von Willebrand factor |
| IPR002035 | 162 | 335 | SM00327 | von Willebrand factor | |
| IPR002035 | 361 | 550 | SM00327 | von Willebrand factor | |
| IPR002035 | 925 | 1104 | SM00327 | von Willebrand factor | |
| IPR002035 | 1142 | 1341 | SM00327 | von Willebrand factor | |
| IPR002223 | 1635 | 1688 | SM00131 | Proteinase inhibitor I2 | |
| ProfileScan | IPR002035 | 1 | 134 | PS50234 | von Willebrand factor |
| IPR002035 | 164 | 337 | PS50234 | von Willebrand factor | |
| IPR002035 | 363 | 549 | PS50234 | von Willebrand factor | |
| IPR002035 | 927 | 1106 | PS50234 | von Willebrand factor | |
| IPR002035 | 1144 | 1340 | PS50234 | von Willebrand factor | |
| IPR003961 | 1513 | 1601 | PS50853 | Fibronectin | |
| IPR002223 | 1637 | 1687 | PS50279 | Proteinase inhibitor I2 | |
| ScanRegExp | IPR002223 | 1665 | 1683 | PS00280 | Proteinase inhibitor I2 |
