Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK05471
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | AB209303 |
|---|---|
| Product ID | ORK05471 |
| Clone name | fk08328 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | HTATSF1 |
| cDNA sequence | DNA sequence (3019 bp) Predicted protein sequence (758 aa) |
| Description | HIV Tat-specific factor 1 (Tat-SF1). |
Length: 3019 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: NO Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 329 bp |
|---|---|
| Genome contig ID | gi89161218f_135306904 |
| PolyA signal sequence (AATAAA,-32) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (115265 - 115314) |
----+----*----+----*----+----*----+----*----+----* |
Length: 758 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| HMMPfam | IPR000504 | 138 | 216 | PF00076 | RNA recognition motif |
| IPR000504 | 291 | 347 | PF00076 | RNA recognition motif | |
| HMMSmart | IPR000504 | 137 | 217 | SM00360 | RNA recognition motif |
| IPR000504 | 268 | 348 | SM00360 | RNA recognition motif | |
| ProfileScan | IPR000504 | 136 | 221 | PS50102 | RNA recognition motif |
| IPR000504 | 267 | 352 | PS50102 | RNA recognition motif |
