Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK06281
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Accession No AB209177
Product ID ORK06281
Clone name ah01984
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol PAX6
cDNA sequence DNA sequence (6174 bp)
Predicted protein sequence (385 aa)
Description Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).
Features of the cloned cDNA sequence

Length: 6174 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : YES
Integrity of 3' end
Length of 3'UTR 0 bp
Genome contig ID gi51511727r_31668060
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Features of the protein sequence

Length: 385 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92414 1.7e-135 100.0 paired box gene...
Homo sapiens
XP_001085217 2.9e-132 100.0 similar to Pair...
Macaca mulatta
BAC25729 5.3e-132 99.7 unnamed protein...
Mus musculus
P26367 5.3e-132 99.7 Paired box prot...
Homo sapiens
EAW68233 5.6e-132 99.7 paired box gene...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR001356 176 230 PD000010 Homeobox
FPrintScan IPR001523 9 26 PR00027 Paired box protein
IPR001523 27 44 PR00027 Paired box protein
IPR001356 210 220 PR00024 Homeobox
IPR001356 220 229 PR00024 Homeobox
HMMPfam IPR001523 3 91 PF00292 Paired box protein
IPR001356 174 230 PF00046 Homeobox
HMMSmart IPR001523 4 91 SM00351 Paired box protein
IPR001356 173 235 SM00389 Homeobox
ProfileScan IPR001523 1 93 PS51057 Paired box protein
IPR001356 171 231 PS50071 Homeobox
ScanRegExp IPR001356 206 229 PS00027 Homeobox
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