Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK06406
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Accession No AB208934
Product ID ORK06406
Clone name ah04823
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol PLXNC1
cDNA sequence DNA sequence (6020 bp)
Predicted protein sequence (1211 aa)
Description Plexin-C1 precursor (Virus-encoded semaphorin protein receptor) (CD232 antigen).
Features of the cloned cDNA sequence

Length: 6020 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 2383 bp
Genome contig ID gi89161190f_92987068
PolyA signal sequence
Flanking genome sequence
(238509 - 238558)

Features of the protein sequence

Length: 1211 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92171 0 100.0 plexin C1 varia...
Homo sapiens
O60486 0 99.9 Plexin-C1; Viru...
Homo sapiens
XP_509270 0 99.7 plexin C1 [Pan ...
Pan troglodytes
XP_001105619 0 98.9 similar to plex...
Macaca mulatta
Q9QZC2 0 90.6 Plexin-C1; Viru...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR002165 97 150 PF01437 Plexin
IPR002165 234 278 PF01437 Plexin
IPR002909 307 393 PF01833 Cell surface receptor IPT/TIG
IPR002909 397 483 PF01833 Cell surface receptor IPT/TIG
IPR013548 654 1178 PF08337 Plexin cytoplasmic region
HMMSmart IPR003659 97 150 SM00423 Plexin/semaphorin/integrin
IPR003659 234 278 SM00423 Plexin/semaphorin/integrin
IPR002909 396 484 SM00429 Cell surface receptor IPT/TIG
IPR002909 486 591 SM00429 Cell surface receptor IPT/TIG
ProfileScan IPR001627 1 95 PS51004 Semaphorin/CD100 antigen
ScanRegExp IPR000215 702 712 PS00284 Protease inhibitor I4

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
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