ORK07660

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07660

Order Kazusa clone(s) from :

Accession No	AB209020
Product ID	ORK07660
Clone name	hj03059
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	IFT140
cDNA sequence	DNA sequence (5210 bp) Predicted protein sequence (600 aa)
Description	Homo sapiens mRNA for KIAA0590 gene product variant protein.

Features of the cloned cDNA sequence

Description

Length: 5210 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Features of the protein sequence

Description

Length: 600 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW85643	2.2e-180	99.7	intraflagellar ...	Homo sapiens
BAG10359	1.7e-179	99.5	intraflagellar ...	synthetic construct
XP_001088942	6.9e-174	86.1	similar to intr...	Macaca mulatta
BAG61170	1.6e-164	87.4	unnamed protein...	Homo sapiens
BAG61110	1.8e-154	99.7	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR000500	29	53	PR00206	Connexins
	IPR000500	60	82	PR00206	Connexins
	IPR000500	85	105	PR00206	Connexins
HMMPfam	IPR013092	11	194	PF00029	Connexin
HMMSmart	IPR013092	51	84	SM00037	Connexin
ScanRegExp	IPR000500	62	75	PS00407	Connexins

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	30	GKVWLSVLFIFRILLLGTAVESA	52	PRIMARY	23
SOSUI2	2	80	ISHVRFWVLQIIFVSVPTLLYLA	102	SECONDARY	23