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Accession No | AB209886 |
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Product ID | ORK06041 |
Clone name | eg00416 |
Vector information | |
Symbol | MSH5 |
cDNA sequence | DNA sequence (6486 bp) Predicted protein sequence (489 aa) |
Description | MutS protein homolog 5. |
Length of 3'UTR | 142 bp |
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Genome contig ID | gi89161210f_31725558 |
PolyA signal sequence (AATAAA,-19) |
+----*----+----*----+----*----+---- |
Flanking genome sequence (112873 - 112922) |
----+----*----+----*----+----*----+----*----+----* |
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Search method | interpro_ID | From | To | Entry | Definition |
---|---|---|---|---|---|
BlastProDom | IPR000432 | 325 | 431 | PD001263 | DNA mismatch repair protein MutS |
HMMPfam | IPR007861 | 83 | 181 | PF05190 | MutS IV |
IPR000432 | 229 | 449 | PF00488 | DNA mismatch repair protein MutS | |
HMMSmart | IPR007696 | 4 | 254 | SM00533 | MutS III |
IPR000432 | 270 | 447 | SM00534 | DNA mismatch repair protein MutS | |
ScanRegExp | IPR000432 | 351 | 367 | PS00486 | DNA mismatch repair protein MutS |
Method | No. | N terminal | transmembrane region | C terminal | type | length | SOSUI2 | 1 | 3 | PYHHLNPSWMWPVLLFVFLSQTV | 25 | SECONDARY | 23 | 2 | 116 | RIPSCSVIYIPLIGFLLSIPRLP | 138 | PRIMARY | 23 | 3 | 200 | RAAVLTRVLDLASRLDVLLALAS | 222 | SECONDARY | 23 | 4 | 284 | SIYLKQVGLITFMALVGSFVPAE | 306 | PRIMARY | 23 |
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