ORK07219

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07219

Order Kazusa clone(s) from :

Accession No	AB209258
Product ID	ORK07219
Clone name	fk00223
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	TRPC5
cDNA sequence	DNA sequence (3689 bp) Predicted protein sequence (725 aa)
Description	Short transient receptor potential channel 5 (TrpC5) (Htrp-5) (Htrp5).

Features of the cloned cDNA sequence

Description

Length: 3689 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1181 bp
Genome contig ID	gi89161218r_110809835
PolyA signal sequence (AATAAA,-17)	+--------+--------+----*----+---- TGTTATTACTTTTATAATAATAAATCTTAAATAAG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATTCATTGTCTTCATTTTCTGCTTCATAGCCCTCAACAATAACAAAAAAA

Features of the protein sequence

Description

Length: 725 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAD92495	100.0	transient recep...	Homo sapiens
XP_001100983	100.0	transient recep...	Macaca mulatta
Q9UL62	100.0	Short transient...	Homo sapiens
XP_001101078	100.0	transient recep...	Macaca mulatta
XP_001488782	99.7	similar to capa...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR005461	271	287	PR01646	Transient receptor potential channel 5
	IPR005461	344	356	PR01646	Transient receptor potential channel 5
	IPR002153	607	628	PR01097	Transient receptor potential protein
	IPR002153	629	642	PR01097	Transient receptor potential protein
	IPR002153	657	670	PR01097	Transient receptor potential protein
HMMPfam	IPR002110	70	93	PF00023	Ankyrin
	IPR002110	142	165	PF00023	Ankyrin
	IPR013555	177	239	PF08344	Transient receptor ion channel II
	IPR005821	406	625	PF00520	Ion transport
HMMSmart	IPR002110	70	99	SM00248	Ankyrin
HMMSmart	IPR002110	142	171	SM00248	Ankyrin
HMMTigr	IPR004729	18	723	TIGR00870	Transient receptor potential channel
ScanRegExp	IPR001865	494	505	PS00962	Ribosomal protein S2

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	329	VVKLLTCMTIGFLFPMLSIAYLI	351	PRIMARY	23
	2	364	PFIKFICHTASYLTFLFMLLLAS	386	SECONDARY	23
	3	476	TLIAEALFAISNILSSLRLISLF	498	SECONDARY	23
	4	513	RMLLDILKFLFIYCLVLLAFANG	535	PRIMARY	23
	5	571	ETLQSLFWSVFGLLNLYVTNVK	592	SECONDARY	22
	6	601	VGATMFGTYNVISLVVLLNMLIA	623	SECONDARY	23