Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01517
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Accession No
Product ID ORK01517
Clone name bm04669
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
Symbol ARF1
cDNA sequence DNA sequence (1838 bp)
Predicted protein sequence (213 aa)
Flexi ORF Clone FXC01517
Description ADP-ribosylation factor 1.
Features of the cloned cDNA sequence

Length: 1838 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 1196 bp
Genome contig ID gi89161185f_226237031
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
AATTATAGCTATTAGAATAAAATCTCTTAACTATT
Flanking genome sequence
(116504 - 116553)
----+----*----+----*----+----*----+----*----+----*
TCACCGGCTCTCCAGTGCTTCCACACAGGCATGCTGCCCCCAGGAGATGG

Features of the protein sequence

Length: 213 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
P84079 3.3e-72 100.0 ADP-ribosylatio...
Rattus norvegicus
P51643 5.3e-72 99.4 ADP-ribosylatio...
Xenopus laevis
BAE31170 7.2e-72 99.4 unnamed protein...
Mus musculus
BAE28685 8.4e-72 99.4 unnamed protein...
Mus musculus
BAE40054 8.4e-72 99.4 unnamed protein...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001806 50 71 PR00449 Ras GTPase
IPR006689 51 74 PR00328 ARF/SAR superfamily
IPR006689 79 103 PR00328 ARF/SAR superfamily
IPR001806 86 108 PR00449 Ras GTPase
IPR006689 106 131 PR00328 ARF/SAR superfamily
IPR001806 149 162 PR00449 Ras GTPase
IPR006689 151 172 PR00328 ARF/SAR superfamily
HMMPfam IPR006689 36 209 PF00025 ARF/SAR superfamily
HMMSmart IPR006687 31 209 SM00178 GTP-binding protein SAR1
IPR006688 33 213 SM00177 ADP-ribosylation factor
IPR003579 50 212 SM00175 Ras small GTPase
HMMTigr IPR005225 47 207 TIGR00231 Small GTP-binding protein domain
ScanRegExp IPR006688 183 205 PS01019 ADP-ribosylation factor
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