Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK01558
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK01558 |
| Clone name | ek00030 |
| Vector information |
The cDNA fragment was inserted at the XhoI-SacI site
of the ...
|
| Symbol | VCP |
| cDNA sequence | DNA sequence (3239 bp) Predicted protein sequence (822 aa) |
|
HaloTag ORF Clone |
FHC01558
|
| Flexi ORF Clone | FXC01558 |
| Description | valosin-containing protein |
Length: 3239 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: NO Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 553 bp |
|---|---|
| Genome contig ID | gi89161216r_34946561 |
| PolyA signal sequence (AATAAA,-22) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (100000 - 99951) |
----+----*----+----*----+----*----+----*----+----* |
Length: 822 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| HMMPfam | IPR003338 | 38 | 124 | PF02359 | AAA ATPase VAT |
| IPR003959 | 256 | 440 | PF00004 | AAA ATPase | |
| IPR003959 | 529 | 716 | PF00004 | AAA ATPase | |
| HMMSmart | IPR003593 | 253 | 389 | SM00382 | AAA+ ATPase |
| IPR003593 | 526 | 665 | SM00382 | AAA+ ATPase | |
| HMMTigr | IPR005938 | 39 | 782 | TIGR01243 | AAA ATPase |
| ScanRegExp | IPR003960 | 357 | 375 | PS00674 | AAA ATPase |
| IPR003960 | 633 | 651 | PS00674 | AAA ATPase |
